PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 548aa    MW: 60581.4 Da    PI: 5.5514
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00005genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08253273526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C++Gd+C +aHg
  AA5G00005 253 PCPEFRK-GSCSRGDSCEYAHG 273
                8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.91E-1450137IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-854125IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0145888IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.9E-1458164IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.64558167IPR020683Ankyrin repeat-containing domain
CDDcd002046.30E-1360156No hitNo description
SMARTSM002480.02893125IPR002110Ankyrin repeat
PROSITE profilePS5008810.15293128IPR002110Ankyrin repeat
SMARTSM003562.5E-5248274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5252275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619253275IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6253273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4281311IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.334283307IPR000571Zinc finger, CCCH-type
SMARTSM0035613283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGDVEEVSHI NFSLIMELSA CDDIFGFKSL IEQEGLENID RSGLWYGRKL GSNKMGFEER  60
TPLMVAALLG SKEIVNYIIN TGLVDVNRSC GSDGVTALHC AVAGLSLNSP EVVTLLINAS  120
ADRDSRDASG NKPIDMIFPC LNPVFNSRKK VLERLLKGSN DLNEEEEESE VLVSILNPIS  180
PPRTSERKEY PVDPTLPDIK NGVYGTDEFR MYAFKIKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYHYS CVPCPEFRKG SCSRGDSCEY AHGIFECWLH PAQYRTRLCK DETNCSRRVC  300
FFAHRPEELR PLYPSTGSGV PSPRSSFSSC TSSSAFDIGP ISPLGLGSAT TPPLSPNGLP  360
SPMNGKTWMN WPSATPPTLQ LPRSRLKSSL NAREIDFCDE IQSLASPLFS PDIHRKSLNK  420
LGPVSPNISL ASSPVGLGSP FSIDSSTGLN SRTSQRSQNF LERSSGMTSP CLNDWGSLDG  480
KLDWSVHGDE LQKLRKSASV LLRAGGLRDE MEEPDVSWVE PMVKEPTDAR LGPVWMEQSF  540
METEQTVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483463.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLV4LRP40.0V4LRP4_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.8__1801__AT5G58620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein